Human Neocortical Neurosolver
Installation
Preface
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1. Getting Started
1.1 Introducing HNN
1.2 Template Model
1.3 Installation
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2. Model Assumptions
2.1 Cortical Column Structure
2.2 Primary Electrical Currents
2.3 Neurons: Morphology and Physiology
2.4 Synaptic Connectivity
2.5 Evoked and Rhythmic Driving Inputs
2.6 Tonic and Noisy Driving Inputs
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3. Using the HNN GUI
3.1 GUI Quickstart
3.2 Optimization in the GUI
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4. Simulating ERPs
4.1 Intro and Overview Lecture
4.2 Following Along
4.3 Getting Started
4.4 Simulation Workflow
4.5 Simulate the Default Network
4.6 Simulation Scaling and Smoothing
4.7.1 Multiscale Interpretation Part I
4.7.2 Multiscale Interpretation Part II
4.8 Adjusting Evoked Drives
4.9 Adjusting Network Parameters And Testing Hypotheses
4.10 From Hypotheses to Validation Targets
4.11 Concluding Remarks
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5. Simulating Alpha/Beta Rhythms
5.1 GUI Tutorial of Alpha/Beta Rhythms
5.2 API Tutorial of Alpha/Beta Rhythms
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6. Simulating Gamma Rhythms
6.1 GUI Tutorial of Gamma Rhythms
6.2 API Tutorial of Gamma Rhythms
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7. Using the HNN API
7.1 Plot Firing Pattern
7.2 Record & Plot Extracellular Potentials
7.3 Modifying Local Connectivity
7.4 Animating HNN Simulations
7.5 Batch Simulation
7.6 Simulate Beta-modulated ERP
7.7 Parallelism: Joblib
7.8 Parallelism: MPI
7.9 Optimize simulated evoked response parameters
7.10 Optimize simulated rhythmic response parameters
7.11 Cell Metadata Tutorial
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8. From Data to Simulation
8.1 From MEG sensor-space data to HNN simulation
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4.11 Concluding Remarks
