Human Neocortical Neurosolver
Installation
Preface
Read This First!
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1. Getting Started
1.1 Introducing HNN
1.3 Installation
1.4 Follow Along with the Textbook
1.5 Simulation Workflow
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2. Model Assumptions
2.1 Template Model
2.2 Cortical Column Structure
2.3 Primary Electrical Currents
2.4 Neurons: Morphology and Physiology
2.5 Synaptic Connectivity
2.6 Evoked and Rhythmic Driving Inputs
2.7 Tonic and Noisy Driving Inputs
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3. Using the HNN GUI
3.1 GUI Quickstart
3.2 Optimization in the GUI
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4. Simulating ERPs
4.1 Intro and Overview Lecture
4.2 Getting Started
4.3 Simulate an ERP using the Default Parameters
4.4 Simulation Scaling and Smoothing
4.5.1 Multiscale Interpretation Part I
4.5.2 Multiscale Interpretation Part II
4.6 Adjusting Evoked Drives
4.7 Adjusting Network Parameters And Testing Hypotheses
4.8 From Hypotheses to Validation Targets
4.9 Concluding Remarks
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5. Simulating Alpha/Beta Rhythms
5.1 GUI Tutorial of Alpha/Beta Rhythms
5.2 API Tutorial of Alpha/Beta Rhythms
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6. Simulating Gamma Rhythms
6.1 GUI Tutorial of Gamma Rhythms
6.2 API Tutorial of Gamma Rhythms
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7. Other HNN API Examples
7.1 Plot Firing Pattern
7.2 Record & Plot Extracellular Potentials
7.3 Modifying Local Connectivity
7.4 Animating HNN Simulations
7.5 Batch Simulation
7.6 Simulate Beta-Modulated ERP
7.7 Parallelism: Joblib
7.8 Parallelism: MPI
7.9 Optimize Simulated Evoked Response Parameters
7.10 Optimize Simulated Rhythmic Response Parameters
7.11 Cell Metadata Tutorial
7.12 Replaying Spike Data as Input
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8. HNN API Median Nerve Example
8.1 From MEG Sensor Space to HNN Circuit Interpretation
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4.9 Concluding Remarks
GUI Video Walkthrough
