hnn_core.viz.plot_cell_connectivity

hnn_core.viz.plot_cell_connectivity(net, conn_idx, src_gid=None, axes=None, colorbar=True, colormap='viridis', show=True)

Plot synaptic weight of connections.

This is an interactive plot with source cells shown in the left subplot and connectivity from a source cell to all the target cells in the right subplot. Click on the cells in the left subplot to explore how the connectivity pattern changes for different source cells.

Parameters:

netInstance of Network object

The Network object

conn_idxint

Index of connection to be visualized from net.connectivity

src_gidint | None

The cell ID of the source cell. It must be an element of net.connectivity[conn_idx][‘gid_pairs’].keys() If None, the first cell from the list of valid src_gids is selected.

axesinstance of Axes3D

Matplotlib 3D axis

colormapstr

The name of a matplotlib colormap. Default: ‘viridis’

colorbarbool

If True (default), adjust figure to include colorbar.

showbool

If True, show the plot

Returns:

figinstance of matplotlib Figure

The matplotlib figure handle.

Notes

Target cells will be determined by the connections in net.connectivity[conn_idx]. If the target cell is not connected to the source cell, it will appear as a smaller black cross. Source cell is plotted as a red square. Source cell will not be plotted if the connection corresponds to a drive, ex: poisson, bursty, etc.